Detailed information of SNP:
|
SNP ID:
sf0611426500(Gbrowse)
Chromosome: chr06 Position: 11426500 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 55.94% | 44.06% |
| All Indica | 782 | 92.20% | 7.80% |
| All Japonica | 494 | 5.06% | 94.94% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 201 | 86.57% | 13.43% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611426500 | G->C | INTERGENIC | None |