Detailed information of SNP:
|
SNP ID:
sf0611431224(Gbrowse)
Chromosome: chr06 Position: 11431224 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 52.08% | 47.92% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611431224 | G->A | INTERGENIC | None |