Detailed information of SNP:
|
SNP ID:
sf0611437318(Gbrowse)
Chromosome: chr06 Position: 11437318 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 93.00% | 7.00% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 492 | 96.14% | 3.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611437318 | C->T | INTERGENIC | None |