Detailed information of SNP:
|
SNP ID:
sf0611451886(Gbrowse)
Chromosome: chr06 Position: 11451886 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 82.28% | 17.72% |
| All Indica | 795 | 98.24% | 1.76% |
| All Japonica | 462 | 61.47% | 38.53% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 311 | 79.42% | 20.58% |
| Tropical Japonica | 85 | 17.65% | 82.35% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611451886 | C->T | INTERGENIC | None |