Detailed information of SNP:



SNP ID: sf0611451886(Gbrowse)

Chromosome: chr06

Position: 11451886
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1377 82.28% 17.72%
All Indica795 98.24% 1.76%
All Japonica462 61.47% 38.53%
Aus66 33.33% 66.67%
Indica I372 98.12% 1.88%
Indica II213 97.65% 2.35%
Indica Intermediate210 99.05% 0.95%
Temperate Japonica311 79.42% 20.58%
Tropical Japonica85 17.65% 82.35%
Japonica Intermediate66 33.33% 66.67%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 80.00% 20.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0611451886 C->T INTERGENIC None