Detailed information of SNP:
SNP ID:
sf0611451886(Gbrowse)
Chromosome: chr06 Position: 11451886 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1377 | 82.28% | 17.72% |
All Indica | 795 | 98.24% | 1.76% |
All Japonica | 462 | 61.47% | 38.53% |
Aus | 66 | 33.33% | 66.67% |
Indica I | 372 | 98.12% | 1.88% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 210 | 99.05% | 0.95% |
Temperate Japonica | 311 | 79.42% | 20.58% |
Tropical Japonica | 85 | 17.65% | 82.35% |
Japonica Intermediate | 66 | 33.33% | 66.67% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0611451886 | C->T | INTERGENIC | None |