Detailed information of SNP:
|
SNP ID:
sf0611452378(Gbrowse)
Chromosome: chr06 Position: 11452378 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 75.53% | 24.47% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 483 | 50.93% | 49.07% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 322 | 66.77% | 33.23% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611452378 | G->A | LOC_Os06g19980(LOC_Os06g19980.1) | Non-Synonymous SNP |