Detailed information of SNP:
|
SNP ID:
sf0611456308(Gbrowse)
Chromosome: chr06 Position: 11456308 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.95% | 49.05% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611456308 | C->G | LOC_Os06g19980(LOC_Os06g19980.1) | INTRON |