Detailed information of SNP:
|
SNP ID:
sf0611462001(Gbrowse)
Chromosome: chr06 Position: 11462001 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 54.18% | 45.82% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 493 | 2.23% | 97.77% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 331 | 2.72% | 97.28% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611462001 | T->C | LOC_Os06g19990(LOC_Os06g19990.2) | INTRON |
| sf0611462001 | T->C | LOC_Os06g19990(LOC_Os06g19990.1) | INTRON |
| sf0611462001 | T->C | LOC_Os06g19990(LOC_Os06g19990.3) | INTRON |
| sf0611462001 | T->C | LOC_Os06g19990(LOC_Os06g19990.4) | INTRON |