Detailed information of SNP:
|
SNP ID:
sf0611465167(Gbrowse)
Chromosome: chr06 Position: 11465167 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.95% | 44.05% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611465167 | G->A | INTERGENIC | None |