Detailed information of SNP:
|
SNP ID:
sf0611469899(Gbrowse)
Chromosome: chr06 Position: 11469899 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.38% | 45.62% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 493 | 3.85% | 96.15% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611469899 | G->A | INTERGENIC | None |