Detailed information of SNP:
|
SNP ID:
sf0611470475(Gbrowse)
Chromosome: chr06 Position: 11470475 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611470475 | G->A | INTERGENIC | None |