Detailed information of SNP:
|
SNP ID:
sf0611472569(Gbrowse)
Chromosome: chr06 Position: 11472569 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.99% | 41.01% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611472569 | T->C | INTERGENIC | None |