Detailed information of SNP:
|
SNP ID:
sf0611476700(Gbrowse)
Chromosome: chr06 Position: 11476700 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 96.18% | 3.82% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611476700 | T->C | LOC_Os06g20020(LOC_Os06g20020.1) | Non-Synonymous SNP |