Detailed information of SNP:
|
SNP ID:
sf0611481315(Gbrowse)
Chromosome: chr06 Position: 11481315 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 58.66% | 41.34% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 494 | 4.86% | 95.14% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611481315 | A->G | INTERGENIC | None |