Detailed information of SNP:
|
SNP ID:
sf0611481705(Gbrowse)
Chromosome: chr06 Position: 11481705 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 79.29% | 20.71% |
| All Indica | 795 | 68.93% | 31.07% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 372 | 70.70% | 29.30% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611481705 | A->T | INTERGENIC | None |