Detailed information of SNP:
|
SNP ID:
sf0611496254(Gbrowse)
Chromosome: chr06 Position: 11496254 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.43% | 41.57% |
| All Indica | 792 | 37.75% | 62.25% |
| All Japonica | 497 | 83.50% | 16.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 33.33% | 66.67% |
| Indica II | 212 | 40.09% | 59.91% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611496254 | A->T | INTERGENIC | None |