Detailed information of SNP:
|
SNP ID:
sf0611496726(Gbrowse)
Chromosome: chr06 Position: 11496726 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 80.61% | 19.39% |
| All Indica | 793 | 69.23% | 30.77% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 71.43% | 28.57% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 209 | 67.46% | 32.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611496726 | G->A | INTERGENIC | None |