Detailed information of SNP:
|
SNP ID:
sf0611509240(Gbrowse)
Chromosome: chr06 Position: 11509240 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 62.77% | 37.23% |
| All Indica | 793 | 36.07% | 63.93% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 33.15% | 66.85% |
| Indica II | 212 | 34.43% | 65.57% |
| Indica Intermediate | 210 | 42.86% | 57.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611509240 | G->A | LOC_Os06g20070(LOC_Os06g20070.1) | Synonymous |