Detailed information of SNP:
|
SNP ID:
sf0611509916(Gbrowse)
Chromosome: chr06 Position: 11509916 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 54.20% | 45.80% |
| All Indica | 784 | 88.39% | 11.61% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 369 | 88.35% | 11.65% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 207 | 83.57% | 16.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611509916 | A->C | INTERGENIC | None |