Detailed information of SNP:
|
SNP ID:
sf0611511030(Gbrowse)
Chromosome: chr06 Position: 11511030 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 52.64% | 47.36% |
| All Indica | 786 | 85.62% | 14.38% |
| All Japonica | 495 | 3.23% | 96.77% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 369 | 87.80% | 12.20% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611511030 | C->G | INTERGENIC | None |