Detailed information of SNP:
|
SNP ID:
sf0611518167(Gbrowse)
Chromosome: chr06 Position: 11518167 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 76.64% | 23.36% |
| All Indica | 797 | 66.62% | 33.38% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 69.17% | 30.83% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611518167 | A->G | LOC_Os06g20090(LOC_Os06g20090.1) | Synonymous |