Detailed information of SNP:
|
SNP ID:
sf0611525398(Gbrowse)
Chromosome: chr06 Position: 11525398 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 76.29% | 23.71% |
| All Indica | 798 | 66.54% | 33.46% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 69.79% | 30.21% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611525398 | C->T | LOC_Os06g20090(LOC_Os06g20090.1) | UTR_3_PRIME |