Detailed information of SNP:
|
SNP ID:
sf0611533901(Gbrowse)
Chromosome: chr06 Position: 11533901 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 98.37% | 1.63% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611533901 | T->A | INTERGENIC | None |