Detailed information of SNP:
|
SNP ID:
sf0611536597(Gbrowse)
Chromosome: chr06 Position: 11536597 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 54.52% | 45.48% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611536597 | C->T | INTERGENIC | None |