Detailed information of SNP:
|
SNP ID:
sf0611536646(Gbrowse)
Chromosome: chr06 Position: 11536646 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.47% | 44.53% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611536646 | G->A | INTERGENIC | None |