Detailed information of SNP:
|
SNP ID:
sf0611537132(Gbrowse)
Chromosome: chr06 Position: 11537132 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.68% | 44.32% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611537132 | G->A | INTERGENIC | None |