Detailed information of SNP:
|
SNP ID:
sf0611537490(Gbrowse)
Chromosome: chr06 Position: 11537490 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 77.31% | 22.69% |
| All Indica | 756 | 60.32% | 39.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 350 | 58.29% | 41.71% |
| Indica II | 206 | 62.14% | 37.86% |
| Indica Intermediate | 200 | 62.00% | 38.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611537490 | G->A | INTERGENIC | None |