Detailed information of SNP:
|
SNP ID:
sf0611538104(Gbrowse)
Chromosome: chr06 Position: 11538104 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 69.36% | 30.64% |
| All Indica | 769 | 46.94% | 53.06% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 362 | 44.48% | 55.52% |
| Indica II | 206 | 41.26% | 58.74% |
| Indica Intermediate | 201 | 57.21% | 42.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611538104 | A->G | INTERGENIC | None |