Detailed information of SNP:
|
SNP ID:
sf0611538120(Gbrowse)
Chromosome: chr06 Position: 11538120 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 86.50% | 13.50% |
| All Indica | 733 | 76.40% | 23.60% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 344 | 75.00% | 25.00% |
| Indica II | 196 | 75.00% | 25.00% |
| Indica Intermediate | 193 | 80.31% | 19.69% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611538120 | C->T | INTERGENIC | None |