Detailed information of SNP:
|
SNP ID:
sf0611538237(Gbrowse)
Chromosome: chr06 Position: 11538237 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 74.09% | 25.91% |
| All Indica | 751 | 54.46% | 45.54% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 353 | 50.71% | 49.29% |
| Indica II | 204 | 52.94% | 47.06% |
| Indica Intermediate | 194 | 62.89% | 37.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611538237 | A->G | INTERGENIC | None |