Detailed information of SNP:
|
SNP ID:
sf0611538417(Gbrowse)
Chromosome: chr06 Position: 11538417 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 91.80% | 8.20% |
| All Indica | 747 | 95.45% | 4.55% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 352 | 96.02% | 3.98% |
| Indica II | 201 | 94.53% | 5.47% |
| Indica Intermediate | 194 | 95.36% | 4.64% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611538417 | T->C | INTERGENIC | None |