Detailed information of SNP:
|
SNP ID:
sf0611555575(Gbrowse)
Chromosome: chr06 Position: 11555575 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611555575 | C->A | LOC_Os06g20140(LOC_Os06g20140.1) | Non-Synonymous SNP |