Detailed information of SNP:
|
SNP ID:
sf0611556849(Gbrowse)
Chromosome: chr06 Position: 11556849 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 89.85% | 10.15% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611556849 | A->G | INTERGENIC | None |