Detailed information of SNP:
|
SNP ID:
sf0611556967(Gbrowse)
Chromosome: chr06 Position: 11556967 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 88.08% | 11.92% |
| All Indica | 798 | 82.58% | 17.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611556967 | A->C | INTERGENIC | None |