Detailed information of SNP:
|
SNP ID:
sf0611557644(Gbrowse)
Chromosome: chr06 Position: 11557644 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.14% | 46.86% |
| All Indica | 799 | 22.53% | 77.47% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 19.47% | 80.53% |
| Indica II | 213 | 8.45% | 91.55% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611557644 | A->G | INTERGENIC | None |