Detailed information of SNP:
|
SNP ID:
sf0611560421(Gbrowse)
Chromosome: chr06 Position: 11560421 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 61.30% | 38.70% |
| All Indica | 786 | 34.48% | 65.52% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 33.15% | 66.85% |
| Indica II | 208 | 27.40% | 72.60% |
| Indica Intermediate | 207 | 43.96% | 56.04% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611560421 | G->A | INTERGENIC | None |