Detailed information of SNP:
|
SNP ID:
sf0611560543(Gbrowse)
Chromosome: chr06 Position: 11560543 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.68% | 47.32% |
| All Indica | 799 | 21.65% | 78.35% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611560543 | T->C | INTERGENIC | None |