Detailed information of SNP:
|
SNP ID:
sf0611561186(Gbrowse)
Chromosome: chr06 Position: 11561186 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 56.75% | 43.25% |
| All Indica | 790 | 93.29% | 6.71% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 204 | 91.18% | 8.82% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 5 | 80.00% | 20.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611561186 | T->C | INTERGENIC | None |