Detailed information of SNP:
|
SNP ID:
sf0611570280(Gbrowse)
Chromosome: chr06 Position: 11570280 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 98.72% | 1.28% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 488 | 97.34% | 2.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611570280 | G->A | LOC_Os06g20170(LOC_Os06g20170.1) | Non-Synonymous SNP |