Detailed information of SNP:
|
SNP ID:
sf0611573661(Gbrowse)
Chromosome: chr06 Position: 11573661 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.92% | 46.08% |
| All Indica | 798 | 22.18% | 77.82% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611573661 | A->G | INTERGENIC | None |