Detailed information of SNP:
|
SNP ID:
sf0611576535(Gbrowse)
Chromosome: chr06 Position: 11576535 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.67% | 44.33% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611576535 | A->G | LOC_Os06g20180(LOC_Os06g20180.1) | Synonymous |