Detailed information of SNP:
|
SNP ID:
sf0611583864(Gbrowse)
Chromosome: chr06 Position: 11583864 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 496 | 3.02% | 96.98% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611583864 | A->C | INTERGENIC | None |