Detailed information of SNP:
|
SNP ID:
sf0611587315(Gbrowse)
Chromosome: chr06 Position: 11587315 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 52.67% | 47.33% |
| All Indica | 785 | 88.28% | 11.72% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 369 | 88.62% | 11.38% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611587315 | A->G | INTERGENIC | None |