Detailed information of SNP:
|
SNP ID:
sf0611587755(Gbrowse)
Chromosome: chr06 Position: 11587755 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611587755 | T->C | INTERGENIC | None |