Detailed information of SNP:
|
SNP ID:
sf0611589586(Gbrowse)
Chromosome: chr06 Position: 11589586 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 55.70% | 44.30% |
| All Indica | 794 | 92.82% | 7.18% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611589586 | C->T | INTERGENIC | None |