Detailed information of SNP:
|
SNP ID:
sf0611601554(Gbrowse)
Chromosome: chr06 Position: 11601554 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 55.64% | 44.36% |
| All Indica | 792 | 25.88% | 74.12% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 372 | 21.77% | 78.23% |
| Indica II | 211 | 20.38% | 79.62% |
| Indica Intermediate | 209 | 38.76% | 61.24% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611601554 | C->T | INTERGENIC | None |