Detailed information of SNP:
|
SNP ID:
sf0611602889(Gbrowse)
Chromosome: chr06 Position: 11602889 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 53.56% | 46.44% |
| All Indica | 787 | 22.74% | 77.26% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 370 | 24.05% | 75.95% |
| Indica II | 210 | 20.48% | 79.52% |
| Indica Intermediate | 207 | 22.71% | 77.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611602889 | C->A | INTERGENIC | None |