Detailed information of SNP:
|
SNP ID:
sf0611625675(Gbrowse)
Chromosome: chr06 Position: 11625675 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.45% | 4.55% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 87.04% | 12.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 87.23% | 12.77% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 65 | 72.31% | 27.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611625675 | T->A | LOC_Os06g20260(LOC_Os06g20260.1) | INTRON |