Detailed information of SNP:
|
SNP ID:
sf0611627410(Gbrowse)
Chromosome: chr06 Position: 11627410 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.97% | 45.03% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611627410 | G->C | INTERGENIC | None |