Detailed information of SNP:
|
SNP ID:
sf0611633341(Gbrowse)
Chromosome: chr06 Position: 11633341 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.77% | 20.23% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611633341 | G->A | INTERGENIC | None |