Detailed information of SNP:
|
SNP ID:
sf0611635430(Gbrowse)
Chromosome: chr06 Position: 11635430 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.48% | 24.52% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611635430 | A->T | INTERGENIC | None |